PGC MINDANAO
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SERVICES IN PGC MINDANAO

The establishment of a Philippine Genome Center Mindanao Genomics Consortium Facility is an opportune venue to make genomics laboratory procedures which exist in the PGC Headquarters at UP Diliman, now accessible to Mindanao by researchers, students and local government agencies.                                                                                                                                                                                              

L A B O R A T O R Y   
​S E R V I C E S

E Q U I P M E N T
​U S E

   Sample Preparation

   Spectrophotometry

   Fluorometry

   Flow Cytometry

   Polymerase Chain Reaction

   Agarose Gel Electrophoresis
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   Protein Workflow







    Agarose Gel Electrophoresis 

    Gel Documentation

    Refrigerated Microcentrifuge 


    Spectrophotometer




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T R A I N I N G S

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   B I O I N F O R M A T I C S

            
Genome Assembly

             RNA-Seq

             QTL Analysis

             Linux and Perl

             R Training





   M E T H O D O L O G Y

             DNA Extraction

             Protein Extraction

             PCR (end-point, gradient)

             Protein Workflow

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 D A T A   A N A L Y S I S

Phylogenetic Analysis

Optical Density for RT-PCR

Marker Analysis

Functional Annotation

Primer Design


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Contact PGC-MSF for pricing details

S E R V I C E S
​IN PGC HEADQUARTERS IN UP DILIMAN

D N A   S E Q U E N C I N G

Next Generation Sequencing for whole genome, targeted resequencing, metagenomics and RNA sequencing.

The following platforms are available:
  • Ion Torrent PGM (up to 1 Gb output)
  • Ion Proton (up to 10 Gb output)
  • Illumina MiSeq (up to 15 Gb output paired-end read)
  • Illumina NextSeq 500 (up to 120 Gb output paired-end read)
  • Sanger Sequencing (ABI 3730xl Sequencer)
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Order Form – Capillary Sequencing
  • Fragment Analysis (Dyes: FAM, VIC, HEX, ROX, LIZ, PET)
Order Form – Fragment Analysis
  • Fluorometric-based Quantification (Qubit Assay)

Order Form – NA Quantification
  • Nucleic Acid Extraction (Bacterial Culture, Fungi, Blood, Plant/Animal Tissue, Environmental Samples etc.)
Order Form – NA Extraction
    • Microchip Electrophoresis (MultiNA)
    • Extract2Seq (16S gene, 18S gene, GMO detection)
    • Equipment Rental
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Image by Times
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​Order Form
Workflow
Pricing Guide
Client Conforme
Client Information Sheet
Training Request Form
Sample Submission Requirements
Modes of Payment
​Contact PGC in Diliman at:
(+63 2) 981-8500 loc 4707
dnasequencing@pgc.up.edu.ph

B I O I N F O R M A T I C S

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Image by Future Lab

Data Processing and Analysis for the following workflows:

  • Genome and Transcriptome Assembly
  • Variant / SNP Calling
  • Sequence Similarity Search
  • SSR / Microsatellite Search and Primer Design
  • Molecular Phylogenetics
  • Customized workflows
  • Programming / Scripting
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  Image by Health Education England

High-Performance Computing access for analysis and storage of next-generation sequencing data. Software and databases for the following types of analysis are available:

  • NGS Data Quality Control
  • Genome, Transcriptome and Metagenome Assembly
  • Genome Alignment
  • Read Mapping and Variant Calling
  • Genome Annotation
  • Phylogenetic Analysis
  • Data Visualization
  • Statistical Analysis
  • Differential Gene Expression Analysis
  • Targeted (e.g. 16s) Metagenome Analysis
  • Sequence Similarity Search
Contact PGC in Diliman at:
​
981-8500 loc 4706
bioinformatics@up.edu.ph


Information derived from PGG website at https://pgc.up.edu.ph

---  D I V I S I O N S  ---

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Research and Development

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Bioinformatics

Coordinate all the research projects at PGC Mindanao and facilitate/assist in equipment use.

Specific Tasks:

1) Coordinate with members of the Mindanao Genomics Consortium on research plans and activities.
2) Provide technical support to researchers conducting experiments at PGC Mindanao.
3) Supervise and manage schedules of the use of research equipment at PGC Mindanao.
4) Provide recommendations on research methodologies and interpretation of experimental data.
5) Provide laboratory skills training to undergraduate and graduate research students, and research assistants working on projects that is anchored at PGC Mindanao.
6) In-charge of all research equipment, maintenance and responsible usage
Manage bioinformatic database and facility, and perform bioinformatic analysis services for clients

Specific Tasks:

1) Coordinate with all research projects in the areas of omics and bioinformatics at PGC Mindanao.
2) Provide technical services on bioinformatic analysis to Mindanao researchers.
3) Provide recommendations on interpretation of bioinformatics data
4) Manage and maintain computational facility and equipment.
5) Conduct workshops and hands-on training on bioinformatics to students, researchers, faculty and private professionals.


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Diagnostics And Laboratory

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Science Education and Training

Develop diagnostics tools and perform lab tests for clients

Specific Tasks:

1) In-charge of active diagnostics research projects and development of diagnostic tools
2) Perform lab tests for clients on: Infectious disease screening, molecular surveillance of pathogens, microbiome analysis, species barcoding, etc.
3) Coordinate with government agencies, private sectors and target beneficiaries for widespread implementation of novel diagnostic tools


Organize and conduct seminars, workshops and trainings on molecular biology and omics.

Specific Tasks:

1) In-charge of S&T outreach activities to students, teachers, researchers and private professionals  (e.g. Molecular Biology Camp)
2) Conduct research extension activities in coordination with PGC Mindanao researchers to disseminate timely research findings for public education
3) Assist in the conduct of hands-on training and workshops on diagnostics and bioinformatics
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Administrative

Support staff for PGC Mindanao

Specific Tasks:

1) Perform administrative works for PGC Mindanao such as, procurement of research equipment, laboratory supplies and reagents, processing of honoraria/salaries of research personnel, records keeping, financial  reports and other paper works
2) In-charged of frontline services to clients seeking bioinformatics, diagnostics and other laboratory services
3) Provide technical assistance to other research personnel during conduct of seminars, workshops and other relevant hands-on trainings.
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